All of my papers can be found here. Google Scholar: https://scholar.google.com/citations?user=t-Y_awYAAAAJ&hl=en

If you cannot access a particular paper, please email me. Equal authorship is indicated by bold and italics. 

1. LIN28B alters ribosomal dynamics to promote metastasis in MYCN-driven malignancy. Pavlos Missios, Edroaldo Lummertz da Rocha, Daniel S Pearson, Julia Philipp, Maria M Aleman, Mehdi Pirouz, Dorian Farache, Joseph W Franses, Caroline Kubaczka, Kaloyan M Tsanov, Deepak K Jha, Brian Pepe-Mooney, John T Powers, Richard I Gregory, Amy SY Lee, Daniel Dominguez, David T Ting, George Q Daley

2. Transcriptome Dynamics of Hematopoietic Stem Cell Formation Revealed Using a Combinatorial Runx1 and Ly6a Reporter System. Chen MJ, Lummertz da Rocha E, Cahan P, Kubaczka C, Hunter P, Sousa P, Mullin NK, Fujiwara Y, Nguyen M, Tan Y, Landry S, Han A, Yang S, Lu YF, Jha DK, Vo LT, Zhou Y, North TE, Zon LI, Daley GQ, Schlaeger TM. Stem Cell Reports. 2020 May 12;14(5):956-971. doi: 10.1016/j.stemcr.2020.03.020. Epub 2020 Apr 16. PMID: 32302558

3. The developmental stage of the hematopoietic niche regulates lineage in MLL-rearranged leukemia.  Rowe RG, Lummertz da Rocha E, Sousa P, Missios P, Morse M, Marion W, Yermalovich A, Barragan J, Mathieu R, Jha DK, Fleming MD, North TE, Daley GQ. J Exp Med. 2019 Mar 4;216(3):527-538. doi: 10.1084/jem.20181765. Epub 2019 Feb 6. PMID: 30728174 

4. Reconstruction of complex single-cell trajectories using CellRouter.  Lummertz da Rocha E, Rowe RG, Lundin V, Malleshaiah M, Jha DK, Rambo CR, Li H, North TE, Collins JJ, Daley GQ. Nat Commun. 2018 Mar 1;9(1):892. doi: 10.1038/s41467-018-03214-y. PMID: 29497036 

5. Regulation of embryonic haematopoietic multipotency by EZH1.  Vo LT, Kinney MA, Liu X, Zhang Y, Barragan J, Sousa PM, Jha DK, Han A, Cesana M, Shao Z, North TE, Orkin SH, Doulatov S, Xu J, Daley GQ. Nature. 2018 Jan 25;553(7689):506-510. doi: 10.1038/nature25435. Epub 2018 Jan 17. PMID: 29342143 

6. Set2 methyltransferase facilitates cell cycle progression by maintaining transcriptional fidelity.  Dronamraju R, Jha DK, Eser U, Adams AT, Dominguez D, Choudhury R, Chiang YC, Rathmell WK, Emanuele MJ, Churchman LS, Strahl BD. Nucleic Acids Res. 2018 Feb 16;46(3):1331-1344. doi: 10.1093/nar/gkx1276. PMID: 29294086 

7. Redundant Functions for Nap1 and Chz1 in H2A.Z Deposition. Dronamraju R, Ramachandran S, Jha DK, Adams AT, DiFiore JV, Parra MA, Dokholyan NV, Strahl BD. Sci Rep. 2017 Sep 7;7(1):10791. doi: 10.1038/s41598-017-11003-8. PMID: 28883625 

8. Haematopoietic stem and progenitor cells from human pluripotent stem cells.  Sugimura R, Jha DK, Han A, Soria-Valles C, da Rocha EL, Lu YF, Goettel JA, Serrao E, Rowe RG, Malleshaiah M, Wong I, Sousa P, Zhu TN, Ditadi A, Keller G, Engelman AN, Snapper SB, Doulatov S, Daley GQ. Nature. 2017 May 25;545(7655):432-438. doi: 10.1038/nature22370. Epub 2017 May 17. PMID: 28514439 

9. Structure/Function Analysis of Recurrent Mutations in SETD2 Protein Reveals a Critical and Conserved Role for a SET Domain Residue in Maintaining Protein Stability and Histone H3 Lys-36 Trimethylation. Hacker KE, Fahey CC, Shinsky SA, Chiang YJ, DiFiore JV, Jha DK, Vo AH, Shavit JA, Davis IJ, Strahl BD, Rathmell WK. J Biol Chem. 2016 Sep 30;291(40):21283-21295. doi: 10.1074/jbc.M116.739375. Epub 2016 Aug 15. PMID: 27528607 

10. A high-resolution transcriptome map of cell cycle reveals novel connections between periodic genes and cancer.  Dominguez D, Tsai YH, Gomez N, Jha DK, Davis I, Wang Z. Cell Res. 2016 Aug;26(8):946-62. doi: 10.1038/cr.2016.84. Epub 2016 Jul 1. PMID: 27364684 

11. Histone H3K36 methylation regulates pre-mRNA splicing in Saccharomyces cerevisiae.  Sorenson MR, Jha DK, Ucles SA, Flood DM, Strahl BD, Stevens SW, Kress TL. RNA Biol. 2016;13(4):412-26. doi: 10.1080/15476286.2016.1144009. Epub 2016 Jan 29. PMID: 26821844 

12. Association of Taf14 with acetylated histone H3 directs gene transcription and the DNA damage response.  Shanle EK, Andrews FH, Meriesh H, McDaniel SL, Dronamraju R, DiFiore JV, Jha D, Wozniak GG, Bridgers JB, Kerschner JL, Krajewski K, Martín GM, Morrison AJ, Kutateladze TG, Strahl BD. Genes Dev. 2015 Sep 1;29(17):1795-800. doi: 10.1101/gad.269977.115. PMID: 26341557 

13. SET-ting the stage for DNA repair.  Jha DK, Pfister SX, Humphrey TC, Strahl BD. Nat Struct Mol Biol. 2014 Aug;21(8):655-7. doi: 10.1038/nsmb.2866. PMID: 25093525 No abstract available. 

14. An RNA polymerase II-coupled function for histone H3K36 methylation in checkpoint activation and DSB repair.  Jha DK, Strahl BD. Nat Commun. 2014 Jun 9;5:3965. doi: 10.1038/ncomms4965. PMID: 24910128